STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0606PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mfa:Mfla_2640 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (401 aa)    
Predicted Functional Partners:
Daci_1275
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: ajs:Ajs_0537 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.801
Daci_0605
SMART: Tetratricopeptide domain protein; KEGG: mfa:Mfla_2639 tetratricopeptide TPR_2.
       0.783
Daci_0133
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: aav:Aave_4330 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
     0.763
Daci_2945
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: mms:mma_2625 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.721
Daci_1277
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
  
 0.677
Daci_1318
PFAM: glycosyl transferase family 2; methyltransferase small; Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_4142 glycosyl transferase, family 2.
  
  
 0.652
Daci_0937
PFAM: Nucleotidyl transferase; KEGG: aav:Aave_4583 nucleotidyl transferase.
  
  
 0.633
Daci_3718
PFAM: transferase hexapeptide repeat containing protein; KEGG: cbe:Cbei_3719 maltose O-acetyltransferase.
  
  
 0.614
Daci_4435
PFAM: oxidoreductase domain protein; dihydrodipicolinate reductase; Oxidoreductase domain; homoserine dehydrogenase NAD-binding; KEGG: pol:Bpro_4498 oxidoreductase-like.
 
  
 0.610
Daci_0561
PFAM: glycosyl transferase family 2; KEGG: aav:Aave_0599 glycosyl transferase, family 2.
 
  
 0.591
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.