STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0611Acetyltransferase; KEGG: xac:XAC1961 acetyltransferase. (216 aa)    
Predicted Functional Partners:
Daci_0614
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; KEGG: mfa:Mfla_2642 3-oxoacyl-(acyl-carrier protein) synthase.
 
   
 0.857
Daci_0613
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xac:XAC1963 3-oxoacyl-[ACP] reductase.
 
     0.823
Daci_0612
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mfa:Mfla_2644 short-chain dehydrogenase/reductase SDR.
 
     0.819
Daci_0610
PFAM: Rieske [2Fe-2S] domain protein; KEGG: mfa:Mfla_2646 Rieske (2Fe-2S) region.
 
     0.812
Daci_0615
KEGG: pfl:PFL_1656 acyl carrier protein-related protein.
     
 0.787
Daci_0607
KEGG: mfa:Mfla_2647 hypothetical protein.
 
   
 0.740
cysS
KEGG: ajs:Ajs_1623 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia DALR; tRNA synthetase class I (M); Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
  
 0.737
Daci_0609
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: pfl:PFL_3447 hypothetical protein.
 
     0.712
Daci_0608
Hypothetical protein.
       0.661
Daci_1442
TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aav:Aave_4297 cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.627
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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