STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0634SAF domain; KEGG: aav:Aave_4419 SAF domain. (254 aa)    
Predicted Functional Partners:
Daci_0625
KEGG: aav:Aave_4429 flagellar rod assembly protein/muramidase FlgJ; TIGRFAM: flagellar rod assembly protein/muramidase FlgJ; PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2.
 
  
 0.993
Daci_0631
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.986
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.984
Daci_0624
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: protein of unknown function DUF1078 domain protein; KEGG: aav:Aave_4430 flagellar hook-associated protein FlgK.
 
  
 0.982
Daci_0633
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.982
Daci_0629
TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; KEGG: aav:Aave_4424 transcriptional regulator, fis family.
 
  
 0.981
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: aav:Aave_4396 flagellar hook-basal body complex subunit FliE.
 
  
 0.981
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.979
Daci_0623
TIGRFAM: flagellar hook-associated protein 3; PFAM: flagellin domain protein; KEGG: rfr:Rfer_3724 flagellin-like.
 
  
 0.977
Daci_0645
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: ajs:Ajs_3800 flagellar motor switch protein FliM.
 
  
 0.976
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.