STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0651PFAM: regulatory protein LuxR; response regulator receiver; KEGG: aav:Aave_4382 two component transcriptional regulator, LuxR family. (209 aa)    
Predicted Functional Partners:
Daci_0652
PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: ajs:Ajs_3793 response regulator receiver sensor signal transduction histidine kinase.
 
 
 0.960
Daci_1809
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: aav:Aave_3862 two component transcriptional regulator, LuxR family.
  
  
 
0.905
Daci_1808
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; CHASE3 domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: aav:Aave_3863 multi-sensor signal transduction histidine kinase.
 
 
 0.866
Daci_2366
Histidine kinase; KEGG: pap:PSPA7_4410 virulence sensor protein BvgS; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: extracellular solute-binding protein family 3.
  
 
 0.856
Daci_0806
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: rme:Rmet_5166 putative signal transduction histidine kinase.
 
 
 0.783
Daci_5321
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; Cache type 2 domain protein; KEGG: aav:Aave_1122 histidine kinase.
 
   
 0.768
Daci_0378
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: pna:Pnap_4085 integral membrane sensor signal transduction histidine kinase.
 
 
 0.745
Daci_3080
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: pfl:PFL_3637 sensor histidine kinase/response regulator.
  
 
 0.704
Daci_1105
PFAM: GAF domain protein; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: ajs:Ajs_0432 multi-sensor signal transduction histidine kinase.
 
 
 0.677
Daci_3381
Putative signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: pol:Bpro_2542 periplasmic sensor signal transduction histidine kinase.
 
 
 0.643
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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