STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0656PFAM: CheW domain protein; KEGG: vei:Veis_2175 putative CheW protein. (162 aa)    
Predicted Functional Partners:
Daci_0655
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: aav:Aave_4378 CheA signal transduction histidine kinase.
 
 0.998
Daci_3084
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: rso:RSc3136 putative methyl-accepting chemotaxis transmembrane protein.
 
 0.987
cheB
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 
 0.983
Daci_4414
PFAM: chemotaxis sensory transducer; Cache type 2 domain protein; KEGG: bxe:Bxe_B2784 methyl-accepting chemotaxis sensory transducer.
 
 0.975
Daci_0172
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mms:mma_0161 methyl-accepting chemotaxis transducer transmembrane protein.
 
 0.974
Daci_0740
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: bvi:Bcep1808_5173 methyl-accepting chemotaxis sensory transducer.
 
 0.974
Daci_0742
PFAM: chemotaxis sensory transducer; KEGG: bte:BTH_I2374 methyl-accepting chemotaxis protein.
 
 0.974
Daci_1600
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: ajs:Ajs_2152 methyl-accepting chemotaxis sensory transducer.
 
 0.974
Daci_2325
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_4495 methyl-accepting chemotaxis sensory transducer.
 
 0.974
Daci_3266
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: aav:Aave_0227 methyl-accepting chemotaxis sensory transducer.
 
 0.974
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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