Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0668KEGG: aav:Aave_0412 putative transmembrane protein. (148 aa)    
Predicted Functional Partners:
Daci_0832
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
     0.647
argS
KEGG: aav:Aave_0414 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase.
       0.615
Daci_6014
PFAM: GCN5-related N-acetyltransferase; KEGG: ajs:Ajs_4076 GCN5-related N-acetyltransferase.
  
     0.597
Daci_0670
PFAM: Sporulation domain protein; KEGG: aav:Aave_0415 sporulation domain protein.
       0.569
Daci_2577
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rso:RSc1447 putative transcription regulator protein.
  
     0.568
Daci_2611
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rso:RSc1447 putative transcription regulator protein.
  
     0.568
Daci_0667
KEGG: aav:Aave_0410 hypothetical protein.
       0.528
Daci_5063
KEGG: aav:Aave_1383 hypothetical protein.
  
     0.519
Daci_5001
KEGG: ajs:Ajs_1190 conserved hypothetical signal peptide protein.
  
     0.492
Daci_4870
KEGG: ajs:Ajs_1766 putative transmembrane protein.
  
     0.487
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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