STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0676PFAM: band 7 protein; KEGG: pol:Bpro_1471 band 7 protein. (379 aa)    
Predicted Functional Partners:
Daci_0678
PFAM: protein of unknown function UPF0027; KEGG: pol:Bpro_1473 protein of unknown function UPF0027.
 
   0.837
ftsH
ATP-dependent metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.
  
 0.786
Daci_0679
KEGG: bam:Bamb_5431 nucleotidyltransferase-like protein.
 
  
 0.761
rtcA
RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
 
 
 0.756
rtcB
PFAM: protein of unknown function UPF0027; KEGG: bur:Bcep18194_B0923 hypothetical protein; Belongs to the RtcB family.
 
   0.713
Daci_2460
TIGRFAM: release factor H-coupled RctB family protein; PFAM: protein of unknown function UPF0027; KEGG: pfl:PFL_2087 RtcB protein.
 
   0.630
Daci_0677
KEGG: sdy:SDY_3647 hypothetical protein.
       0.568
Daci_0675
PFAM: sigma-54 factor interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; SMART: AAA ATPase; KEGG: pna:Pnap_0497 regulator of RNA terminal phosphate cyclase.
  
   
 0.538
Daci_3820
PFAM: band 7 protein; KEGG: pmy:Pmen_3387 hypothetical protein.
  
  
 0.518
Daci_5314
PFAM: Rhomboid family protein; KEGG: xcv:XCV2885 putative rhomboid family membrane protein.
  
 0.498
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.