STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0678PFAM: protein of unknown function UPF0027; KEGG: pol:Bpro_1473 protein of unknown function UPF0027. (412 aa)    
Predicted Functional Partners:
rtcA
RNA 3'-phosphate cyclase; Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
 
  
 0.918
Daci_0679
KEGG: bam:Bamb_5431 nucleotidyltransferase-like protein.
 
    0.859
Daci_0676
PFAM: band 7 protein; KEGG: pol:Bpro_1471 band 7 protein.
 
   0.837
Daci_0675
PFAM: sigma-54 factor interaction domain-containing protein; regulator of RNA terminal phosphate cyclase; SMART: AAA ATPase; KEGG: pna:Pnap_0497 regulator of RNA terminal phosphate cyclase.
 
   
 0.768
Daci_0677
KEGG: sdy:SDY_3647 hypothetical protein.
       0.675
Daci_2459
TIGRFAM: peptide chain release factor H; PFAM: Class I peptide chain release factor; KEGG: bur:Bcep18194_A4861 class I peptide chain release factor.
 
  
 0.553
Daci_5425
PFAM: Inner membrane CreD family protein; KEGG: aav:Aave_0316 inner membrane CreD family protein.
  
     0.537
Daci_3820
PFAM: band 7 protein; KEGG: pmy:Pmen_3387 hypothetical protein.
  
     0.484
Daci_5761
PFAM: conserved hypothetical protein; KEGG: pfl:PFL_5821 hypothetical protein.
 
     0.475
Daci_3819
SMART: AAA ATPase; KEGG: pmy:Pmen_3386 hypothetical protein.
 
     0.466
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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