STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0684KEGG: aav:Aave_0423 PilT protein domain protein. (162 aa)    
Predicted Functional Partners:
Daci_0683
PFAM: putative RNA methylase; THUMP domain protein; KEGG: aav:Aave_0422 putative RNA methylase; Belongs to the methyltransferase superfamily.
       0.816
Daci_6032
KEGG: ajs:Ajs_4108 hypothetical protein.
  
     0.694
Daci_1840
KEGG: ajs:Ajs_3490 putative lipoprotein.
  
     0.693
Daci_5328
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.676
Daci_0832
KEGG: ajs:Ajs_4052 putative lipoprotein transmembrane.
  
     0.675
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
     0.675
Daci_1123
KEGG: vei:Veis_0989 hypothetical protein.
  
     0.662
Daci_2432
KEGG: ajs:Ajs_2788 hypothetical protein.
  
     0.654
Daci_1492
KEGG: aav:Aave_0855 hypothetical protein.
  
     0.628
Daci_4869
KEGG: ajs:Ajs_1767 putative transmembrane protein.
  
     0.612
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.