STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0685PFAM: small multidrug resistance protein; KEGG: swi:Swit_3611 small multidrug resistance protein. (105 aa)    
Predicted Functional Partners:
Daci_1483
TIGRFAM: TonB family protein; KEGG: ajs:Ajs_3655 TonB family protein.
      
 0.544
Daci_2126
KEGG: ajs:Ajs_1124 hypothetical protein.
      
 0.544
Daci_3773
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_4255 TonB family protein.
      
 0.544
Daci_4622
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aav:Aave_3311 TonB family protein.
      
 0.544
Daci_5812
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: ajs:Ajs_2406 TonB family protein.
      
 0.544
Daci_0683
PFAM: putative RNA methylase; THUMP domain protein; KEGG: aav:Aave_0422 putative RNA methylase; Belongs to the methyltransferase superfamily.
       0.454
Daci_0684
KEGG: aav:Aave_0423 PilT protein domain protein.
       0.449
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.