Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0694PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ajs:Ajs_0106 short-chain dehydrogenase/reductase SDR. (259 aa)    
Predicted Functional Partners:
Daci_0695
TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: ajs:Ajs_0105 acetyl-CoA acetyltransferases; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.761
Daci_0692
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: ajs:Ajs_0112 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family.
 
 
  0.715
Daci_0693
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_0108 uncharacterized protein UPF0065.
       0.653
Daci_0697
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: ajs:Ajs_0103 acyl-CoA dehydrogenase domain protein.
 
  0.585
Daci_0042
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: swi:Swit_1570 short-chain dehydrogenase/reductase SDR.
  
     0.573
Daci_4525
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_4512 short-chain dehydrogenase/reductase SDR.
  
     0.570
Daci_0696
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase.
  
   0.517
Daci_3340
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: aav:Aave_1396 short-chain dehydrogenase/reductase SDR.
  
     0.501
Daci_1762
KEGG: rfr:Rfer_1849 (acyl-carrier protein) S-malonyltransferase.
 
 
 0.500
Daci_5564
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_0868 short-chain dehydrogenase/reductase SDR.
  
     0.421
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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