STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0696PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0104 AMP-dependent synthetase and ligase. (521 aa)    
Predicted Functional Partners:
Daci_1266
KEGG: ajs:Ajs_0517 PGAP1 family protein.
     
 0.801
Daci_4602
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2318 AMP-dependent synthetase and ligase.
  
  
 
0.712
Daci_1072
PFAM: AMP-dependent synthetase and ligase; KEGG: vei:Veis_1683 AMP-dependent synthetase and ligase.
  
  
 
0.710
Daci_4753
TIGRFAM: non-ribosomal peptide synthase; amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Thioesterase; condensation domain protein; phosphopantetheine-binding; KEGG: bbt:BBta_6813 arthrofactin synthetase/syringopeptin synthetase C-related non-ribosomal peptide synthetase.
 
 
0.708
Daci_0928
PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_4454 AMP-dependent synthetase and ligase.
  
  
 
0.707
Daci_1265
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0516 AMP-dependent synthetase and ligase.
  
  
 
0.699
Daci_0946
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_3950 AMP-dependent synthetase and ligase.
  
  
 
0.693
Daci_1405
PFAM: AMP-dependent synthetase and ligase; KEGG: reh:H16_A2076 long-chain-fatty-acid--CoA ligase.
  
  
 
0.690
Daci_3751
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_2038 AMP-dependent synthetase and ligase.
 
 
0.686
Daci_0027
PFAM: AMP-dependent synthetase and ligase; KEGG: rfr:Rfer_4067 AMP-dependent synthetase and ligase.
 
 
0.682
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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