Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_0699PFAM: PAAR repeat-containing protein; KEGG: ppr:PBPRA3102 hypothetical protein. (113 aa)    
Predicted Functional Partners:
Daci_0698
TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_3486 rhs element Vgr protein.
 
   
 0.924
Daci_0700
KEGG: mxa:MXAN_4169 hypothetical protein.
 
     0.858
Daci_3085
KEGG: pae:PA0092 hypothetical protein.
  
 
 0.810
Daci_3859
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: aav:Aave_1480 protein of unknown function DUF879.
 
  
 0.791
Daci_0702
Hypothetical protein; KEGG: bps:BPSS1058 bacteriophage GP30 protein.
     
 0.790
Daci_3851
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: aav:Aave_1477 protein of unknown function DUF877.
 
  
 0.781
Daci_3844
TIGRFAM: type VI secretion protein, VC_A0114 family; PFAM: protein of unknown function DUF876; KEGG: aav:Aave_1471 protein of unknown function DUF876.
 
  
 0.777
Daci_0701
Hypothetical protein.
       0.773
Daci_3860
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: aav:Aave_1481 protein of unknown function DUF1305.
 
  
 0.736
Daci_3868
TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_2127 rhs element Vgr protein.
 
   
 0.733
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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