Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Daci_0704KEGG: mxa:MXAN_6136 hypothetical protein. (369 aa)    
Predicted Functional Partners:
Daci_0705
KEGG: aav:Aave_4007 hypothetical protein.
       0.773
Daci_0702
Hypothetical protein; KEGG: bps:BPSS1058 bacteriophage GP30 protein.
  
    0.763
Daci_0703
Hypothetical protein.
      
0.714
Daci_0706
TIGRFAM: yecA family protein; PFAM: SEC-C motif domain protein; KEGG: reu:Reut_B5710 sec-C motif.
       0.645
Daci_0699
PFAM: PAAR repeat-containing protein; KEGG: ppr:PBPRA3102 hypothetical protein.
       0.615
Daci_0700
KEGG: mxa:MXAN_4169 hypothetical protein.
       0.615
Daci_0701
Hypothetical protein.
       0.615
Daci_0698
TIGRFAM: type VI secretion system Vgr family protein; PFAM: Rhs element Vgr protein; KEGG: aav:Aave_3486 rhs element Vgr protein.
  
    0.598
Daci_0707
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: gur:Gura_0591 transcriptional regulator, XRE family.
       0.555
Daci_1802
TIGRFAM: methyltransferase; PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_3517 putative methyltransferase.
  
    0.407
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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