Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_0775Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: aav:Aave_2665 transcriptional regulator, Crp/Fnr family. (237 aa)    
Predicted Functional Partners:
Daci_2132
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: reh:H16_B1187 transcriptional regulator, CRP-family.
  
     0.762
Daci_0774
PFAM: beta-lactamase domain protein; KEGG: rme:Rmet_2149 beta-lactamase-like protein.
       0.548
Daci_4365
PFAM: protein kinase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_3066 serine/threonine protein kinase.
 
 
 0.530
Daci_1174
TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: sme:SMc01870 probable aquaporin Z (bacterial nodulin-like intrinsic) transmembrane protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 0.460
Daci_1825
SMART: cyclic nucleotide-binding; KEGG: neu:NE1296 cyclic nucleotide-binding domain:cAMP-dependent protein kinase.
  
   
 0.430
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
     
 0.429
Daci_5705
PFAM: Calcium-binding EF-hand-containing protein; KEGG: aav:Aave_3976 putative signal transduction protein with EFhand domain.
    
 0.426
Daci_5738
PFAM: ferredoxin; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: smd:Smed_2364 putative adenylate/guanylate cyclase.
 
 
 0.420
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.408
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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