STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0782PFAM: Xylose isomerase domain protein TIM barrel; KEGG: vei:Veis_3271 xylose isomerase domain protein TIM barrel. (289 aa)    
Predicted Functional Partners:
Daci_0786
KEGG: sme:SMb20484 putative ABC transporter periplasmic sugar-binding protein.
 
    0.900
Daci_0783
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: ypi:YpsIP31758_3268 carbohydrate uptake ABC transporter 2 (CUT2) family, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.839
Daci_0784
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: rle:pRL120193 putative permease component of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
    0.837
Daci_0781
KEGG: rha:RHA1_ro03885 hypothetical protein.
 
     0.822
Daci_0785
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL80086 putative ATP-binding component of ABC transporter.
 
    0.820
Daci_0985
PFAM: PfkB domain protein; KEGG: rso:RSc1240 probable transferase kinase protein.
 
  
 0.692
Daci_0787
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: rsh:Rsph17029_3435 regulatory protein, LacI.
 
  
 0.661
Daci_3180
PFAM: PfkB domain protein; KEGG: vei:Veis_3416 PfkB domain protein.
 
  
 0.616
Daci_0984
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: vei:Veis_0068 myo-inositol catabolism IolB domain protein.
 
  
 0.612
Daci_2931
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rso:RSc1239 putative acetolactate synthase protein; Belongs to the TPP enzyme family.
 
  
 0.579
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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