STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0793TIGRFAM: CitB domain protein; KEGG: ajs:Ajs_4071 CitB domain protein. (403 aa)    
Predicted Functional Partners:
Daci_0794
TIGRFAM: precorrin 3B synthase CobZ; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: ajs:Ajs_4070 precorrin 3B synthase CobZ.
 
  
 0.964
Daci_0795
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_4069 transcriptional regulator, LysR family.
 
     0.793
Daci_3645
KEGG: ajs:Ajs_2300 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: Isocitrate dehydrogenase NADP-dependent monomeric type; Belongs to the monomeric-type IDH family.
  
  
 0.730
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 2 family.
  
  
 0.716
Daci_0792
PFAM: conserved hypothetical protein; KEGG: ajs:Ajs_4073 uncharacterized protein UPF0065.
       0.650
Daci_0840
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: aav:Aave_4646 pyruvate ferredoxin/flavodoxin oxidoreductase.
  
  
 0.639
Daci_2654
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.517
Daci_0111
PFAM: metallophosphoesterase; KEGG: aav:Aave_0135 metallophosphoesterase.
 
     0.516
Daci_0799
KEGG: rme:Rmet_5380 hypothetical protein.
 
    0.495
Daci_0796
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rme:Rmet_5383 transcriptional regulator, IclR family.
       0.436
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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