STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0797PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5382 uncharacterized protein UPF0065. (386 aa)    
Predicted Functional Partners:
Daci_5393
PFAM: protein of unknown function DUF112 transmembrane; KEGG: aav:Aave_1070 protein of unknown function DUF112, transmembrane.
    0.694
Daci_0798
PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_5381 AMP-dependent synthetase and ligase.
       0.598
Daci_5394
PFAM: protein of unknown function DUF1468; KEGG: aav:Aave_1069 protein of unknown function DUF1468.
 
  
 0.593
Daci_0796
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rme:Rmet_5383 transcriptional regulator, IclR family.
       0.568
Daci_0799
KEGG: rme:Rmet_5380 hypothetical protein.
       0.522
Daci_3049
PFAM: protein of unknown function DUF112 transmembrane; KEGG: rme:Rmet_5627 protein of unknown function DUF112, transmembrane.
    0.494
Daci_0795
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ajs:Ajs_4069 transcriptional regulator, LysR family.
       0.452
Daci_0801
PFAM: conserved hypothetical protein; KEGG: reh:H16_B2533 probable extra-cytoplasmic solute receptor.
 
    
0.447
Daci_0800
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bbr:BB1217 hypothetical protein; Belongs to the CoA-transferase III family.
  
    0.446
Daci_2520
PFAM: protein of unknown function DUF112 transmembrane; KEGG: ajs:Ajs_1644 protein of unknown function DUF112, transmembrane.
    0.433
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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