STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0834PFAM: Peptidoglycan-binding LysM; KEGG: aav:Aave_4687 peptidoglycan-binding LysM. (401 aa)    
Predicted Functional Partners:
Daci_5577
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: aav:Aave_1000 type IV pilus secretin PilQ.
 
 
 
 0.969
Daci_5579
PFAM: Pilus assembly protein PilO; KEGG: aav:Aave_0998 pilus assembly protein, PilO.
 
 
   0.884
Daci_5580
PFAM: Fimbrial assembly family protein; KEGG: ajs:Ajs_0731 fimbrial assembly family protein.
  
 
   0.882
Daci_5581
TIGRFAM: type IV pilus assembly protein PilM; KEGG: aav:Aave_0996 type IV pilus assembly protein PilM.
  
 
   0.880
Daci_5578
PFAM: Pilus assembly protein PilP; KEGG: aav:Aave_0999 pilus assembly protein, PilQ.
 
 
   0.849
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   0.827
Daci_1927
PFAM: protein of unknown function DUF1508; KEGG: pfo:Pfl_1378 duplicated hypothetical protein.
  
   0.820
Daci_3390
PFAM: type IV pilus assembly PilZ; KEGG: aav:Aave_3410 type IV pilus assembly PilZ.
  
    0.787
Daci_0835
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: ajs:Ajs_4049 transcriptional regulator, fis family.
       0.774
Daci_2602
PFAM: GPW/gp25 family protein; KEGG: csa:Csal_1387 gpW/GP25.
  
   0.774
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.