STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0856PFAM: protein of unknown function DUF1289; KEGG: vei:Veis_2838 protein of unknown function DUF1289. (143 aa)    
Predicted Functional Partners:
Daci_5347
KEGG: aav:Aave_1882 hypothetical protein.
  
     0.763
Daci_5691
PFAM: type II secretion system protein I/J; KEGG: vei:Veis_3523 general secretion pathway protein I.
  
     0.749
Daci_5694
PFAM: General secretion pathway L; KEGG: aav:Aave_0920 hypothetical protein.
  
     0.749
Daci_5696
KEGG: vei:Veis_3528 putative general secretory pathway N transmembrane protein.
  
     0.713
Daci_5692
KEGG: vei:Veis_3524 hypothetical protein.
  
     0.709
Daci_2780
KEGG: aav:Aave_1528 hypothetical protein.
  
     0.695
Daci_5690
TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_3522 general secretion pathway protein H.
  
     0.695
Daci_0111
PFAM: metallophosphoesterase; KEGG: aav:Aave_0135 metallophosphoesterase.
  
     0.694
Daci_1682
KEGG: ajs:Ajs_3529 hypothetical protein.
  
     0.656
Daci_1123
KEGG: vei:Veis_0989 hypothetical protein.
  
     0.650
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.