Daci_0875 protein (Delftia acidovorans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Daci_0875

PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family. (166 aa)

Predicted Functional Partners:

Daci_4952

0.774

Daci_0307

0.759

Daci_5459

0.749

Daci_1123

0.746

Daci_5431

0.738

Daci_0413

0.733

Daci_4736

0.733

Daci_0023

0.730

Daci_3389

0.730

Daci_5059

0.730

Your Current Organism:

Delftia acidovorans

NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Daci_0023	Daci_0307	KEGG: ajs:Ajs_0007 hypothetical protein.	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	0.710
Daci_0023	Daci_0413	KEGG: ajs:Ajs_0007 hypothetical protein.	KEGG: ajs:Ajs_0301 putative ATP synthase protein I.	0.570
Daci_0023	Daci_0875	KEGG: ajs:Ajs_0007 hypothetical protein.	PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family.	0.730
Daci_0023	Daci_1123	KEGG: ajs:Ajs_0007 hypothetical protein.	KEGG: vei:Veis_0989 hypothetical protein.	0.523
Daci_0023	Daci_3389	KEGG: ajs:Ajs_0007 hypothetical protein.	KEGG: aav:Aave_3411 DNA-directed DNA polymerase.	0.629
Daci_0023	Daci_4736	KEGG: ajs:Ajs_0007 hypothetical protein.	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2488 major facilitator superfamily MFS_1.	0.550
Daci_0023	Daci_4952	KEGG: ajs:Ajs_0007 hypothetical protein.	KEGG: aav:Aave_2989 hypothetical protein.	0.763
Daci_0023	Daci_5059	KEGG: ajs:Ajs_0007 hypothetical protein.	KEGG: ajs:Ajs_3145 putative transcriptional regulator.	0.609
Daci_0023	Daci_5431	KEGG: ajs:Ajs_0007 hypothetical protein.	PFAM: outer membrane lipoprotein LolB; KEGG: aav:Aave_3608 putative lipoprotein.	0.674
Daci_0023	Daci_5459	KEGG: ajs:Ajs_0007 hypothetical protein.	KEGG: aav:Aave_3642 hypothetical protein.	0.537
Daci_0307	Daci_0023	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	KEGG: ajs:Ajs_0007 hypothetical protein.	0.710
Daci_0307	Daci_0413	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	KEGG: ajs:Ajs_0301 putative ATP synthase protein I.	0.545
Daci_0307	Daci_0875	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	PFAM: regulatory protein MarR; KEGG: ajs:Ajs_4000 transcriptional regulator, MarR family.	0.759
Daci_0307	Daci_1123	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	KEGG: vei:Veis_0989 hypothetical protein.	0.695
Daci_0307	Daci_3389	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	KEGG: aav:Aave_3411 DNA-directed DNA polymerase.	0.534
Daci_0307	Daci_4736	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2488 major facilitator superfamily MFS_1.	0.586
Daci_0307	Daci_4952	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	KEGG: aav:Aave_2989 hypothetical protein.	0.771
Daci_0307	Daci_5059	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	KEGG: ajs:Ajs_3145 putative transcriptional regulator.	0.761
Daci_0307	Daci_5431	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	PFAM: outer membrane lipoprotein LolB; KEGG: aav:Aave_3608 putative lipoprotein.	0.586
Daci_0307	Daci_5459	PFAM: ProQ activator of osmoprotectant transporter ProP; KEGG: ajs:Ajs_0169 ProQ activator of osmoprotectant transporter ProP.	KEGG: aav:Aave_3642 hypothetical protein.	0.654