Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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Daci_0884KEGG: ajs:Ajs_3990 DNA topoisomerase III; TIGRFAM: DNA topoisomerase III; PFAM: SWIB/MDM2 domain protein; TOPRIM domain protein; DNA topoisomerase type IA central domain protein; SMART: DNA topoisomerase I ATP-binding; DNA topoisomerase I DNA-binding; Toprim sub domain protein. (975 aa)    
Predicted Functional Partners:
Daci_0141
KEGG: aav:Aave_0181 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; Helicase superfamily 1 and 2 ATP-binding; SMART: DEAD-like helicases.
  
 0.926
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.888
Daci_3405
Helicase-like protein; SMART: DEAD-like helicases; KEGG: xfa:XF0680 hypothetical protein.
  
 0.876
Daci_4161
PFAM: helicase domain protein; KEGG: rme:Rmet_2330 helicase-like protein.
  
 0.876
Daci_4207
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: aav:Aave_0157 helicase domain protein.
  
 0.876
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.871
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 0.866
Daci_0894
PFAM: SMC domain protein; KEGG: dar:Daro_1919 SMC protein, N-terminal.
  
 0.866
Daci_3819
SMART: AAA ATPase; KEGG: pmy:Pmen_3386 hypothetical protein.
  
 0.866
Daci_4343
KEGG: aav:Aave_1492 putative DNA topoisomerase, type I.
    
 
 0.860
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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