STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0899PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2324 methyltransferase type 11. (215 aa)    
Predicted Functional Partners:
Daci_0900
PFAM: DTW domain containing protein; KEGG: pol:Bpro_4750 hypothetical protein.
       0.768
Daci_3947
PFAM: integrase family protein; KEGG: pna:Pnap_4572 phage integrase; Belongs to the 'phage' integrase family.
  
     0.582
Daci_5387
PFAM: NUDIX hydrolase; KEGG: aav:Aave_3467 NUDIX hydrolase.
 
     0.582
Daci_1703
Hypothetical protein; KEGG: ppf:Pput_0007 AAA ATPase.
  
     0.581
Daci_2920
PFAM: porin Gram-negative type; KEGG: aav:Aave_1125 porin, gram-negative type.
  
     0.579
Daci_2130
PFAM: regulatory protein Crp; KEGG: ajs:Ajs_3105 putative transcriptional regulator, Crp/Fnr family.
  
     0.576
Daci_0319
PFAM: O-antigen polymerase; KEGG: aav:Aave_0267 O-antigen polymerase.
 
     0.572
Daci_4783
KEGG: aav:Aave_1852 putative metal dependent phosphohydrolase.
  
     0.571
Daci_2983
KEGG: ajs:Ajs_0638 transcriptional regulatory protein, MerR family.
  
    0.566
Daci_2381
KEGG: vei:Veis_1656 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
  
     0.549
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.