STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0918KEGG: aav:Aave_4596 ribosomal subunit interface protein, putative. (126 aa)    
Predicted Functional Partners:
rpsU
PFAM: ribosomal protein S21; KEGG: ajs:Ajs_2858 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.835
rpmA
PFAM: ribosomal protein L27; KEGG: aav:Aave_3674 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.829
rpsI
PFAM: ribosomal protein S9; KEGG: ajs:Ajs_0626 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.826
rpmH
PFAM: ribosomal protein L34; KEGG: vei:Veis_5015 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.825
rpsD
Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
  
 
 0.823
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.821
rpmC
PFAM: ribosomal protein L29; KEGG: aav:Aave_0346 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.818
rpsP
PFAM: ribosomal protein S16; KEGG: ajs:Ajs_3355 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
   
 
 0.818
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.817
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
    
 
 0.817
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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