STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0923PFAM: regulatory protein ArsR; transcriptional regulator TrmB; KEGG: rme:Rmet_2370 transcriptional regulator, ArsR family. (105 aa)    
Predicted Functional Partners:
Daci_0924
PFAM: Rhodanese domain protein; KEGG: rme:Rmet_2371 rhodanese-like protein.
 
  
 0.830
Daci_0922
PFAM: beta-lactamase domain protein; KEGG: rpa:RPA0365 beta-lactamase-like.
 
   
 0.664
Daci_0925
PFAM: peptidase M24; peptidase M24B X-Pro dipeptidase/aminopeptidase domain protein; KEGG: ajs:Ajs_3957 peptidase M24; Belongs to the peptidase M24B family.
     
 0.475
Daci_0926
KEGG: csa:Csal_2373 abortive infection protein.
       0.470
Daci_0921
PFAM: OsmC family protein; KEGG: acb:A1S_1522 predicted redox disulfide bond formation protein OsmC-like protein.
  
  
 0.458
Daci_5724
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: bpe:BP2860 probable cation-transporting ATPase.
 
  
 0.412
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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