STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0929KEGG: rme:Rmet_4455 hypothetical protein. (327 aa)    
Predicted Functional Partners:
kynU
Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively.
  
  
 0.855
Daci_0928
PFAM: AMP-dependent synthetase and ligase; KEGG: rme:Rmet_4454 AMP-dependent synthetase and ligase.
 
     0.853
kynA
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
  
 0.527
kynA-2
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
  
 0.527
Daci_1888
PFAM: major facilitator superfamily MFS_1; KEGG: pfl:PFL_4411 mutlidrug resistance protein, putative.
  
    0.458
Daci_0927
KEGG: rha:RHA1_ro07024 hypothetical protein.
       0.449
Daci_2007
PFAM: protein of unknown function DUF849; KEGG: reu:Reut_B3902 protein of unknown function DUF849, prokaryotic.
  
    0.430
Daci_2011
PFAM: protein of unknown function DUF849; KEGG: reh:H16_B1005 hypothetical protein.
  
    0.430
Daci_4256
PFAM: protein of unknown function DUF849; KEGG: reh:H16_A0032 prokaryotic protein of unknown function,predicted cytosolic protein.
  
    0.430
Daci_5967
PFAM: protein of unknown function DUF849; KEGG: vei:Veis_0513 protein of unknown function DUF849.
  
    0.430
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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