STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0936KEGG: bbr:BB1856 putative integral membrane protein. (278 aa)    
Predicted Functional Partners:
Daci_1203
PFAM: protein of unknown function DUF336; KEGG: pol:Bpro_4102 protein of unknown function DUF336.
  
     0.503
Daci_0937
PFAM: Nucleotidyl transferase; KEGG: aav:Aave_4583 nucleotidyl transferase.
       0.500
Daci_2221
KEGG: pap:PSPA7_1712 hypothetical protein.
  
    0.482
Daci_2020
PFAM: protein of unknown function DUF1486; KEGG: reh:H16_B1892 hypothetical protein.
  
     0.476
Daci_3012
KEGG: aav:Aave_3368 hypothetical protein.
  
    0.465
Daci_0517
PFAM: Cupin 2 conserved barrel domain protein; KEGG: mms:mma_3216 hypothetical protein.
 
 
   0.462
Daci_3778
KEGG: aav:Aave_0646 UvrD/REP helicase.
 
     0.447
Daci_4246
PFAM: molydopterin dinucleotide-binding region; KEGG: ajs:Ajs_2424 molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.439
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.424
Daci_4991
KEGG: reh:H16_B0479 hypothetical protein.
  
     0.418
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.