STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0951PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_3689 transcriptional regulator, IclR family. (268 aa)    
Predicted Functional Partners:
Daci_5727
PFAM: Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; KEGG: reh:H16_B1758 allophanate hydrolase.
  
    0.824
Daci_0043
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bpe:BP2655 putative IclR-family regulatory protein.
  
     0.773
Daci_0796
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: rme:Rmet_5383 transcriptional regulator, IclR family.
  
     0.770
Daci_0581
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: bbt:BBta_4674 putative transcriptional regulatory protein.
  
     0.735
Daci_0949
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_3691 cupin 2, conserved barrel.
 
  
 0.721
Daci_0950
PFAM: alpha/beta hydrolase fold; KEGG: pol:Bpro_3690 alpha/beta hydrolase fold.
     
 0.704
nadX
Aspartate dehydrogenase; Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.
  
    0.635
Daci_0953
Adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily.
       0.419
Daci_0948
PFAM: regulatory protein AsnC/Lrp family; KEGG: mlo:mll7935 transcriptional regulator.
  
  
 0.418
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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