STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0956PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_3692 short-chain dehydrogenase/reductase SDR. (256 aa)    
Predicted Functional Partners:
Daci_0958
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pol:Bpro_3688 short-chain dehydrogenase/reductase SDR.
 
    
0.822
Daci_0959
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: reu:Reut_B3575 hypothetical protein; Belongs to the TPP enzyme family.
 
 0.777
Daci_0957
PFAM: regulatory protein MarR; regulatory protein IclR; Transcriptional regulator IclR; KEGG: pol:Bpro_3689 transcriptional regulator, IclR family.
  
    0.756
Daci_0961
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_3684 glyoxalase/bleomycin resistance protein/dioxygenase.
 
  
 0.731
Daci_0960
PFAM: Aldehyde Dehydrogenase; KEGG: pol:Bpro_3685 betaine-aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
   0.610
Daci_0964
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3681 Rieske (2Fe-2S) region.
 
   
 0.599
Daci_0949
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pol:Bpro_3691 cupin 2, conserved barrel.
 
    0.506
Daci_5880
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_1455 short-chain dehydrogenase/reductase SDR.
 
 
 
 0.484
Daci_1762
KEGG: rfr:Rfer_1849 (acyl-carrier protein) S-malonyltransferase.
 
 
 0.463
Daci_0687
PFAM: ferredoxin; cytochrome P450; Oxidoreductase FAD-binding domain protein; KEGG: reu:Reut_B5278 ferredoxin:cytochrome P450:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region.
 
 
 0.454
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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