Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Daci_0966PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type. (355 aa)    
Predicted Functional Partners:
Daci_0967
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_3970 major facilitator superfamily MFS_1.
       0.675
Daci_5090
PFAM: NlpBDapX family lipoprotein; KEGG: ajs:Ajs_1009 NlpBDapX family lipoprotein.
  
   
 0.589
Daci_3662
PFAM: Ig family protein; KEGG: rfr:Rfer_1577 protease-like.
  
     0.586
Daci_0964
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3681 Rieske (2Fe-2S) region.
       0.554
Daci_0965
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pol:Bpro_3680 ferredoxin.
       0.554
Daci_2229
PFAM: HemY domain protein; KEGG: aav:Aave_1996 HemY domain protein.
  
     0.554
Daci_3255
PFAM: Prophage tail length tape measure; KEGG: aav:Aave_1782 prophage tail length tape measure.
  
     0.550
Daci_5820
PFAM: porin Gram-negative type; KEGG: reh:H16_A1305 outer membrane protein (porin).
  
  
 
0.541
Daci_0514
KEGG: aav:Aave_4527 putative proline rich signal peptide protein.
  
     0.539
Daci_4436
PFAM: porin Gram-negative type; KEGG: bxe:Bxe_C0935 outer membrane porin, OmpC family.
  
  
 
0.538
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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