STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0967PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: spe:Spro_3970 major facilitator superfamily MFS_1. (431 aa)    
Predicted Functional Partners:
Daci_0964
PFAM: Rieske [2Fe-2S] domain protein; KEGG: pol:Bpro_3681 Rieske (2Fe-2S) region.
 
   
 0.695
Daci_0966
PFAM: porin Gram-negative type; KEGG: pol:Bpro_3679 porin, gram-negative type.
       0.675
Daci_5313
KEGG: hch:HCH_02671 hypothetical protein.
 
     0.631
Daci_4257
PFAM: major facilitator superfamily MFS_1; KEGG: reh:H16_A0031 MFS transporter, ACS family.
  
     0.606
Daci_5076
PFAM: major facilitator superfamily MFS_1; KEGG: reu:Reut_B4536 general substrate transporter:major facilitator superfamily MFS_1.
  
     0.582
Daci_1446
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: rme:Rmet_1926 major facilitator superfamily MFS_1.
  
     0.578
Daci_0285
KEGG: ppf:Pput_3076 hypothetical protein.
  
     0.571
Daci_2014
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.569
Daci_2813
PFAM: major facilitator superfamily MFS_1; KEGG: bur:Bcep18194_B0475 major facilitator superfamily (MFS_1) transporter.
  
     0.555
Daci_3305
PFAM: peptidase S15; X-Pro dipeptidyl-peptidase domain protein; KEGG: nfa:nfa43000 putative esterase.
 
     0.518
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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