STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0969TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bpe:BP0523 probable haloacid dehalogenase. (225 aa)    
Predicted Functional Partners:
Daci_0333
PFAM: Aldehyde Dehydrogenase; KEGG: pla:Plav_1859 aldehyde dehydrogenase.
    
 0.901
Daci_4882
PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1756 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
    
 0.901
Daci_0971
PFAM: alanine racemase domain protein; KEGG: bpe:BP0522 putative metal-activated pyridoxal enzyme.
     0.763
Daci_3884
KEGG: rpb:RPB_3526 hypothetical protein.
  
     0.640
Daci_0970
PFAM: conserved hypothetical protein; KEGG: rpc:RPC_3267 uncharacterized protein UPF0065.
       0.578
Daci_0972
PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB0442 hypothetical protein.
  
    0.575
Daci_0968
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: bbr:BB0448 probable transcriptional regulator.
       0.554
Daci_3072
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: bam:Bamb_5784 periplasmic sensor signal transduction histidine kinase.
  
     0.525
Daci_5199
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.515
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
  
  
 0.468
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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