STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0978PFAM: lipolytic protein G-D-S-L family; KEGG: aav:Aave_4567 phospholipase/lecithinase/hemolysin-like protein. (377 aa)    
Predicted Functional Partners:
Daci_0979
PFAM: OmpW family protein; KEGG: aav:Aave_4566 OmpW family protein.
     
 0.693
Daci_5691
PFAM: type II secretion system protein I/J; KEGG: vei:Veis_3523 general secretion pathway protein I.
  
   
 0.631
Daci_2556
KEGG: pol:Bpro_4732 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane.
  
     0.581
Daci_5417
PFAM: Peptidoglycan-binding LysM; KEGG: mfa:Mfla_0431 peptidoglycan-binding LysM.
  
     0.546
Daci_1764
TIGRFAM: holo-ACP synthase, malonate decarboxylase-specific; KEGG: rfr:Rfer_1847 malonate decarboxylase.
  
     0.479
Daci_2821
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pau:PA14_10980 hypothetical protein.
  
  
 0.465
Daci_5693
PFAM: General secretion pathway protein K; KEGG: ajs:Ajs_0671 general secretion pathway protein K.
  
   
 0.463
Daci_4889
PFAM: regulatory protein TetR; KEGG: bxe:Bxe_C1026 transcriptional regulator, TetR family.
  
     0.458
Daci_0977
KEGG: ajs:Ajs_3939 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
       0.438
Daci_4412
PFAM: pentapeptide repeat protein; KEGG: bxe:Bxe_A1294 hypothetical protein.
   
 
 0.438
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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