Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0978PFAM: lipolytic protein G-D-S-L family; KEGG: aav:Aave_4567 phospholipase/lecithinase/hemolysin-like protein. (377 aa)    
Predicted Functional Partners:
Daci_0979
PFAM: OmpW family protein; KEGG: aav:Aave_4566 OmpW family protein.
     
 0.693
Daci_5691
PFAM: type II secretion system protein I/J; KEGG: vei:Veis_3523 general secretion pathway protein I.
  
   
 0.653
Daci_2556
KEGG: pol:Bpro_4732 putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane.
  
     0.581
Daci_5417
PFAM: Peptidoglycan-binding LysM; KEGG: mfa:Mfla_0431 peptidoglycan-binding LysM.
  
     0.546
Daci_1764
TIGRFAM: holo-ACP synthase, malonate decarboxylase-specific; KEGG: rfr:Rfer_1847 malonate decarboxylase.
  
     0.479
Daci_2821
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pau:PA14_10980 hypothetical protein.
  
   
 0.464
Daci_4889
PFAM: regulatory protein TetR; KEGG: bxe:Bxe_C1026 transcriptional regulator, TetR family.
  
     0.458
Daci_5693
PFAM: General secretion pathway protein K; KEGG: ajs:Ajs_0671 general secretion pathway protein K.
  
   
 0.444
Daci_0977
KEGG: ajs:Ajs_3939 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
       0.437
Daci_5690
TIGRFAM: general secretion pathway protein H; KEGG: vei:Veis_3522 general secretion pathway protein H.
  
   
 0.416
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.