STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_0986PFAM: sugar isomerase (SIS); KEGG: vei:Veis_4368 transcriptional regulator, RpiR family. (299 aa)    
Predicted Functional Partners:
Daci_0985
PFAM: PfkB domain protein; KEGG: rso:RSc1240 probable transferase kinase protein.
 
   
 0.913
Daci_0984
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: vei:Veis_0068 myo-inositol catabolism IolB domain protein.
 
   
 0.886
Daci_2932
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bvi:Bcep1808_1385 xylose isomerase domain protein TIM barrel.
 
   
 0.760
Daci_2931
PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein TPP binding domain protein; KEGG: rso:RSc1239 putative acetolactate synthase protein; Belongs to the TPP enzyme family.
 
   
 0.755
iolG
Inositol 2-dehydrogenase; Involved in the oxidation of myo-inositol (MI) to 2-keto-myo- inositol (2KMI or 2-inosose).
 
   
 0.613
Daci_2926
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rso:RSc1245 putative protein implicated in myo-inositol catabolique pathway.
 
     0.607
Daci_2927
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: bur:Bcep18194_A4571 xylose isomerase-like TIM barrel.
 
   
 0.543
Daci_0983
PFAM: conserved hypothetical protein; KEGG: vei:Veis_0062 uncharacterized protein UPF0065.
       0.456
Daci_2924
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rso:RSc1248 hypothetical protein.
 
   
 0.419
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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