STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1027PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_0606 binding-protein-dependent transport systems inner membrane component. (297 aa)    
Predicted Functional Partners:
Daci_1025
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aav:Aave_0604 ABC transporter-related protein.
 
 0.996
Daci_1026
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aav:Aave_0605 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
 
 0.996
Daci_1028
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ajs:Ajs_0387 binding-protein-dependent transport systems inner membrane component.
 
 0.995
Daci_1030
KEGG: aav:Aave_0609 extracellular solute-binding protein, family 1.
 
 0.986
Daci_1029
KEGG: ajs:Ajs_0388 putative integral membrane protein.
 
    0.878
Daci_5594
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_3169 binding-protein-dependent transport systems inner membrane component.
 
 
 0.868
Daci_1024
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: aav:Aave_0603 transcriptional regulator, DeoR family.
 
   
 0.799
Daci_5593
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: vei:Veis_3168 ABC transporter related.
 
 
 0.759
ugpE
Binding-protein-dependent transport systems inner membrane component; Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.
 
 
 0.758
Daci_5468
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: aav:Aave_3653 ABC transporter-related protein; Belongs to the ABC transporter superfamily.
 
 
 0.758
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.