Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1055PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_4852 putative ABC transporter (permease protein). (318 aa)    
Predicted Functional Partners:
Daci_1054
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: eca:ECA0072 ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.989
Daci_1056
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0074 ABC transporter permease protein.
 
 0.982
Daci_5439
KEGG: vei:Veis_0137 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.979
Daci_5668
KEGG: vei:Veis_4293 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.979
Daci_1057
PFAM: extracellular solute-binding protein family 5; KEGG: eca:ECA0075 ABC-type transporter, substrate binding protein.
 
 0.972
Daci_5667
KEGG: vei:Veis_4294 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.969
Daci_1243
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bbr:BB4911 probable ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.952
Daci_1241
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_3142 binding-protein-dependent transport systems inner membrane component.
 
 
 0.927
Daci_5670
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4291 binding-protein-dependent transport systems inner membrane component.
 
 0.927
Daci_2976
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ajs:Ajs_1813 ABC transporter related; Belongs to the ABC transporter superfamily.
  
 0.886
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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