STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_10653-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: ajs:Ajs_0417 3-hydroxyisobutyrate dehydrogenase. (303 aa)    
Predicted Functional Partners:
Daci_0980
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: pol:Bpro_4547 methylmalonate-semialdehyde dehydrogenase.
 
 
 0.924
Daci_2567
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bxe:Bxe_B0974 3-hydroxyisobutyrate dehydrogenase.
  
  
 
0.924
Daci_3695
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_2009 methylmalonate-semialdehyde dehydrogenase.
 
 
 0.924
Daci_3690
KEGG: ajs:Ajs_2005 3-hydroxyisobutyrate dehydrogenase; TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: TrkA-N domain protein; NADP oxidoreductase coenzyme F420-dependent; 6-phosphogluconate dehydrogenase NAD-binding; Belongs to the HIBADH-related family.
  
  
 
0.922
Daci_0333
PFAM: Aldehyde Dehydrogenase; KEGG: pla:Plav_1859 aldehyde dehydrogenase.
  
 
 0.912
Daci_4882
PFAM: Aldehyde Dehydrogenase; KEGG: ajs:Ajs_1756 aldehyde dehydrogenase (NAD(+)); Belongs to the aldehyde dehydrogenase family.
  
 
 0.912
Daci_0137
PFAM: aminotransferase class-III; KEGG: aav:Aave_4333 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
  0.900
Daci_4431
PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: pna:Pnap_0601 6-phosphogluconate dehydrogenase, NAD-binding.
     
  0.900
Daci_6020
Beta-alanine--pyruvate transaminase; PFAM: aminotransferase class-III; KEGG: ajs:Ajs_4103 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.900
Daci_1223
TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pna:Pnap_1210 alcohol dehydrogenase GroES domain protein.
  
  
  0.828
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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