STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1066TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: aav:Aave_0635 twitching motility protein. (378 aa)    
Predicted Functional Partners:
Daci_5581
TIGRFAM: type IV pilus assembly protein PilM; KEGG: aav:Aave_0996 type IV pilus assembly protein PilM.
  
  
 0.824
Daci_5490
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.810
Daci_5489
PFAM: type II secretion system protein; KEGG: ajs:Ajs_0804 type II secretion system protein.
 
   
 0.795
Daci_1300
PFAM: type II secretion system protein; KEGG: aav:Aave_4159 type II secretion system protein.
 
   
 0.787
Daci_5703
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: ajs:Ajs_0663 general secretion pathway protein F.
 
   
 0.773
Daci_5577
TIGRFAM: type IV pilus secretin PilQ; PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: aav:Aave_1000 type IV pilus secretin PilQ.
  
   
 0.735
Daci_1067
PFAM: cyclic nucleotide-binding; KEGG: aav:Aave_0636 cyclic nucleotide-binding protein.
  
    0.685
Daci_5579
PFAM: Pilus assembly protein PilO; KEGG: aav:Aave_0998 pilus assembly protein, PilO.
 
  
 0.680
Daci_1068
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: aav:Aave_0637 twitching motility protein.
 
  
0.668
Daci_5580
PFAM: Fimbrial assembly family protein; KEGG: ajs:Ajs_0731 fimbrial assembly family protein.
  
  
 0.631
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.