STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1094PFAM: thioesterase superfamily protein; KEGG: reh:H16_A0241 uncharacterized protein, possibly involved in aromatic compounds catabolism. (145 aa)    
Predicted Functional Partners:
Daci_1095
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: vei:Veis_0828 biotin/lipoyl attachment domain-containing protein.
       0.773
Daci_1096
PFAM: Carbamoyl-phosphate synthase L chain ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; KEGG: bbr:BB2689 biotin carboxylase.
       0.762
Daci_1097
PFAM: CoA-binding domain protein; KEGG: vei:Veis_0829 CoA-binding domain protein.
       0.762
Daci_1098
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_4969 uncharacterized protein UPF0065.
       0.756
Daci_1099
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: reu:Reut_B3891 propionyl-CoA carboxylase.
     
 0.678
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
 
   0.486
Daci_1100
Putative sigma54 specific transcriptional regulator; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: reu:Reut_B3890 helix-turn-helix, fis-type.
       0.461
Daci_2042
Aromatic catabolism protein-like protein; KEGG: fal:FRAAL3454 hypothetical protein.
 
     0.442
Daci_2423
KEGG: aav:Aave_2200 protein of unknown function DUF339.
  
     0.438
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.