STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1122PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: reh:H16_B1200 putative MFS transporter. (482 aa)    
Predicted Functional Partners:
Daci_1118
KEGG: reh:H16_B1196 transcriptional regulator, GlpP-family.
 
     0.930
Daci_1119
PFAM: FAD linked oxidase domain protein; KEGG: reh:H16_B1197 alkyldihydroxyacetonephosphate synthase.
 
     0.923
Daci_1120
PFAM: FAD dependent oxidoreductase; KEGG: bur:Bcep18194_B2081 FAD dependent oxidoreductase.
 
   
 0.876
Daci_1121
PFAM: carbohydrate kinase FGGY; KEGG: rme:Rmet_5445 carbohydrate kinase, FGGY; Belongs to the FGGY kinase family.
 
  
 0.850
Daci_1984
PFAM: Na+/solute symporter; KEGG: reh:H16_B0867 APC transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.459
Daci_1123
KEGG: vei:Veis_0989 hypothetical protein.
       0.426
Daci_3035
PFAM: major facilitator superfamily MFS_1; KEGG: spc:Sputcn32_1816 major facilitator superfamily MFS_1.
  
   
 0.414
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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