STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1127PFAM: GumN family protein; KEGG: aav:Aave_0743 GumN family protein. (337 aa)    
Predicted Functional Partners:
Daci_1126
PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: aav:Aave_0742 fumarylacetoacetate (FAA) hydrolase.
       0.780
Daci_1128
PFAM: conserved hypothetical protein; KEGG: aav:Aave_0744 uncharacterized protein UPF0065.
       0.551
Daci_1125
PFAM: regulatory protein IclR; Transcriptional regulator IclR; KEGG: aav:Aave_0741 transcriptional regulator, IclR family.
  
    0.546
Daci_4726
KEGG: aav:Aave_3287 hypothetical protein.
  
     0.488
Daci_1458
KEGG: vei:Veis_4558 hypothetical protein.
  
     0.465
Daci_1574
PFAM: CheW domain protein; KEGG: ajs:Ajs_3576 putative CheW protein.
  
     0.438
Daci_1692
PFAM: fatty acid hydroxylase; KEGG: bbr:BB0103 putative desaturase.
  
     0.424
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.