Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1141PFAM: CMP/dCMP deaminase zinc-binding; KEGG: mpt:Mpe_A0774 hypothetical protein. (174 aa)    
Predicted Functional Partners:
Daci_1140
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_1091 binding-protein-dependent transport systems inner membrane component.
       0.745
Daci_1139
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aav:Aave_1092 ABC transporter-related protein.
       0.694
Daci_1138
PFAM: NMT1/THI5 like domain protein; KEGG: aav:Aave_1093 twin-arginine translocation pathway signal.
 
     0.647
hisE
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: ajs:Ajs_0777 phosphoribosyl-ATP pyrophosphohydrolase.
   
  
 0.595
Daci_1136
PFAM: NMT1/THI5 like domain protein; KEGG: aav:Aave_1084 Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.552
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
   
 0.518
ppnP
Protein of unknown function DUF1255; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
     
  0.500
Daci_1137
PFAM: CMP/dCMP deaminase zinc-binding; KEGG: aav:Aave_1083 CMP/dCMP deaminase, zinc-binding.
 
    
0.490
Daci_0896
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: ajs:Ajs_3978 glyoxalase/bleomycin resistance protein/dioxygenase.
  
  
 0.467
Daci_1135
PFAM: 2OG-Fe(II) oxygenase; KEGG: aav:Aave_1085 2OG-Fe(II) oxygenase; Belongs to the iron/ascorbate-dependent oxidoreductase family.
 
    0.461
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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