STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1148PFAM: Domain of unknown function DUF1840; KEGG: aav:Aave_0778 hypothetical protein. (109 aa)    
Predicted Functional Partners:
Daci_6049
PFAM: protein of unknown function DUF1239; KEGG: aav:Aave_4783 protein of unknown function DUF1239.
  
     0.741
Daci_1147
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: aav:Aave_0777 cyclopropane-fatty-acyl-phospholipid synthase.
       0.692
Daci_2987
PFAM: Thioredoxin domain; KEGG: aav:Aave_3386 hypothetical protein.
  
     0.691
Daci_5328
KEGG: ajs:Ajs_3321 hypothetical protein.
  
     0.687
Daci_0526
KEGG: ajs:Ajs_3888 hypothetical protein.
  
     0.627
Daci_1146
KEGG: aav:Aave_3620 hypothetical protein.
       0.605
Daci_5627
KEGG: vei:Veis_4644 porin, gram-negative type.
  
     0.553
Daci_2423
KEGG: aav:Aave_2200 protein of unknown function DUF339.
  
     0.551
Daci_5681
KEGG: aav:Aave_0933 porin, gram-negative type.
  
     0.540
Daci_1490
KEGG: aav:Aave_0853 hypothetical protein.
  
    0.515
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.