STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1160Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; SMART: regulatory protein Crp; KEGG: ajs:Ajs_0473 putative transcriptional regulator, Crp/Fnr family. (242 aa)    
Predicted Functional Partners:
Daci_5431
PFAM: outer membrane lipoprotein LolB; KEGG: aav:Aave_3608 putative lipoprotein.
 
     0.619
Daci_0526
KEGG: ajs:Ajs_3888 hypothetical protein.
  
     0.583
Daci_1249
PFAM: dihydroneopterin aldolase; KEGG: ajs:Ajs_0495 dihydroneopterin aldolase.
  
     0.581
Daci_1159
PFAM: AMP-dependent synthetase and ligase; KEGG: ajs:Ajs_0470 AMP-dependent synthetase and ligase.
 
  
 0.521
Daci_4365
PFAM: protein kinase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; tyrosine protein kinase; serine/threonine protein kinase; KEGG: aav:Aave_3066 serine/threonine protein kinase.
  
 0.501
Daci_1161
KEGG: rme:Rmet_1561 hypothetical protein.
       0.467
Daci_1162
PFAM: Domain of unknown function DUF1814; KEGG: rme:Rmet_1562 hypothetical protein.
       0.467
Daci_4952
KEGG: aav:Aave_2989 hypothetical protein.
  
 
   0.463
Daci_0371
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pna:Pnap_1243 hemerythrin-like metal-binding protein.
 
    0.450
Daci_5558
PFAM: glutamine amidotransferase class-II; glutamate synthase alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: ajs:Ajs_0741 glutamate synthase (ferredoxin).
     
 0.429
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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