STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1163PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: vei:Veis_2499 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (402 aa)    
Predicted Functional Partners:
Daci_1164
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5382 uncharacterized protein UPF0065.
  
    0.775
Daci_1165
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase type 2 domain; KEGG: rme:Rmet_1816 acyl-CoA dehydrogenase-like protein.
  
 
  0.768
Daci_1166
Transcriptional regulator, IclR family; PFAM: regulatory protein IclR; KEGG: reu:Reut_B3701 regulatory protein, IclR.
       0.546
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.