STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1190PFAM: major facilitator superfamily MFS_1; KEGG: ajs:Ajs_2346 major facilitator superfamily MFS_1. (389 aa)    
Predicted Functional Partners:
Daci_4972
PFAM: metallophosphoesterase; KEGG: sma:SAV2323 putative serine/threonine protein phosphatase.
  
     0.559
Daci_0054
KEGG: ajs:Ajs_0034 cytochrome c, class I.
  
     0.496
Daci_3692
KEGG: ajs:Ajs_2006 hypothetical protein.
  
     0.458
Daci_2095
KEGG: har:HEAR2597 putative membrane protein; putative 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
 
   
 0.447
Daci_3176
KEGG: ajs:Ajs_2343 hypothetical protein.
  
     0.427
Daci_0899
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ajs:Ajs_2324 methyltransferase type 11.
  
     0.426
Daci_1869
KEGG: ajs:Ajs_0141 muconolactone delta-isomerase; TIGRFAM: muconolactone delta-isomerase; PFAM: Muconolactone delta-isomerase.
  
   
 0.410
Daci_2130
PFAM: regulatory protein Crp; KEGG: ajs:Ajs_3105 putative transcriptional regulator, Crp/Fnr family.
  
     0.405
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.