STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1195PFAM: OsmC family protein; KEGG: aav:Aave_4272 OsmC family protein. (138 aa)    
Predicted Functional Partners:
Daci_1196
PFAM: regulatory protein MarR; KEGG: ajs:Ajs_0483 transcriptional regulator, MarR family.
  
 0.962
Daci_1297
PFAM: Peptidoglycan-binding LysM; transport-associated; KEGG: ajs:Ajs_0533 peptidoglycan-binding LysM.
   
  
 0.671
Daci_1014
PFAM: Ferritin Dps family protein; KEGG: ajs:Ajs_0378 ferritin, Dps family protein; Belongs to the Dps family.
  
  
 0.573
Daci_0945
PFAM: aldo/keto reductase; KEGG: esa:ESA_03132 hypothetical protein.
  
  
 0.471
Daci_0369
PFAM: CsbD family protein; KEGG: aav:Aave_0312 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.427
Daci_1806
KEGG: aav:Aave_3865 hypothetical protein.
  
  
 0.427
Daci_3473
PFAM: CsbD family protein; KEGG: pna:Pnap_3279 CsbD family protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.427
Daci_1197
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pae:PA2841 probable enoyl-CoA hydratase/isomerase.
       0.418
Daci_1079
PFAM: globin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: pmy:Pmen_3580 globin; Belongs to the globin family.
     
 0.409
Daci_2327
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: mpt:Mpe_A3779 hypothetical protein.
   
    0.404
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.