Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1211Putative plasmid maintenance system antidote protein, XRE family; TIGRFAM: addiction module antidote protein, HigA family; KEGG: dno:DNO_0272 virulence-associated protein VapI. (103 aa)    
Predicted Functional Partners:
Daci_1212
PFAM: plasmid maintenance system killer; KEGG: ppf:Pput_4191 plasmid maintenance system killer.
 
 
 
 0.988
Daci_1536
Transcriptional regulator, XRE family; KEGG: plu:plu2131 putative transcriptional regulator.
 
   
 0.436
Daci_4803
KEGG: bbr:BB3159 hypothetical protein.
 
   
 0.428
vapC-3
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.417
Daci_1686
Putative transcriptional regulator; TIGRFAM: addiction module antidote protein; KEGG: noc:Noc_0569 transcriptional regulator, Cro/CI family.
 
     0.409
Daci_2665
TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system EIIC; phosphotransferase system PTS fructose-specific IIB subunit; KEGG: xom:XOO_2652 PTS system fructose-specific IIBC component.
      
 0.408
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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