Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Daci_1237KEGG: rme:Rmet_5699 hypothetical protein. (484 aa)    
Predicted Functional Partners:
Daci_1236
KEGG: rme:Rmet_5700 hypothetical protein.
       0.697
Daci_5408
KEGG: ajs:Ajs_3428 hypothetical protein.
 
    0.660
Daci_5409
PFAM: protein of unknown function DUF799; KEGG: ajs:Ajs_3429 protein of unknown function DUF799.
 
    0.566
vapC-2
PIN domain protein family protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.522
Daci_0560
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family-like protein; KEGG: rpb:RPB_0468 hypothetical protein.
  
     0.520
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
 
 
 0.483
Daci_1235
KEGG: rme:Rmet_5701 hypothetical protein.
       0.455
Daci_1234
KEGG: rme:Rmet_5702 hypothetical protein.
       0.454
Daci_3000
KEGG: asa:ASA_1101 hypothetical protein.
  
     0.436
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: aav:Aave_4396 flagellar hook-basal body complex subunit FliE.
  
 
   0.433
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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