STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Daci_1240PFAM: extracellular solute-binding protein family 5; KEGG: sit:TM1040_3144 extracellular solute-binding protein, family 5. (530 aa)    
Predicted Functional Partners:
Daci_1241
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_3142 binding-protein-dependent transport systems inner membrane component.
 
 0.970
Daci_1242
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rde:RD1_2223 peptide ABC transporter, permease protein, putative.
 
 
 0.969
Daci_1243
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: bbr:BB4911 probable ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.920
Daci_5437
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3614 binding-protein-dependent transport systems inner membrane component.
 
 0.815
Daci_5438
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aav:Aave_3615 binding-protein-dependent transport systems inner membrane component.
 
 
 0.809
Daci_1056
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA0074 ABC transporter permease protein.
 
 0.803
Daci_5670
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4291 binding-protein-dependent transport systems inner membrane component.
 
 0.769
Daci_1055
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_4852 putative ABC transporter (permease protein).
 
 
 0.767
Daci_5669
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_4292 binding-protein-dependent transport systems inner membrane component.
 
 0.747
Daci_5439
KEGG: vei:Veis_0137 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
  
 0.661
Your Current Organism:
Delftia acidovorans
NCBI taxonomy Id: 398578
Other names: D. acidovorans SPH-1, Delftia acidovorans SPH-1, Delftia acidovorans str. SPH-1, Delftia acidovorans strain SPH-1
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